Vibrational Coherence and Quantum Yield at the Conical Intersection of an Electron-Tunable Oxindole Photoswitch. | Biophysics Workshops in South Africa

Vibrational Coherence and Quantum Yield at the Conical Intersection of an Electron-Tunable Oxindole Photoswitch.


Abstract

Nature’s fastest photoreceptors rhodopsin converts light into motion by C=C isomerisation through a conical intersection (CI), reaching ~0.65 quantum yield (QY) on a sub-picosecond timescale [1]. Synthetic photoswitches built on the same coordinate rarely approach this, and the shortfall matters: in photopharmacology and optogenetics the required light dose scales inversely with extinction coefficient and QY. Theory attributes rhodopsin’s efficiency to vibrational promoter modes synchronising with the reaction coordinate at the CI [2], [3]; coherent nuclear motion surviving the crossing is seen in rhodopsin and the biomimetic NAIP switches[4], but rarely tested elsewhere.

Our oxindole switch is a minimal analogue of the protein’s electrostatic control: the donating strength of a single hydroxyl is set by protonation state. This one handle switches the mechanism itself [5], [6]. OxI-OH decays biexponentially (0.25, 1.3 ps) through a twisted dark state to a pyramidalised CI; OxI-O⁻ bypasses it, decaying in ~200 fs by axial rotation to a geometrically distinct CI. Yet deprotonation raises Z→E QY (20→25%) while lowering E→Z (33→19%) — mechanism and efficiency decouple.

We apply sub-15 fs broadband (300–700 nm) transient absorption to both isomers in both protonation states, resolving excited-state coherences by linear-prediction singular-value decomposition. If synchronisation governs efficiency, coherence amplitude along each CI’s branching coordinate should track the direction-specific QY; its absence would sever the two. This pair isolates CI topography from molecular identity, giving the first test of vibrational synchronisation in a synthetic switch where the mechanism changes but the chromophore does not. A positive correlation would make electron-donating strength a rational handle on isomerisation efficiency, not only on absorption.

[1] R. W. Schoenlein, L. A. Peteanu, R. A. Mathies, and C. V. Shank, ‘The first step in vision: femtosecond isomerization of rhodopsin’, Science, vol. 254, no. 5030, pp. 412–415, 1991.
[2] M. Filatov and M. Olivucci, ‘Designing conical intersections for light-driven single molecule rotary motors: From precessional to axial motion’, J. Org. Chem., vol. 79, no. 8, pp. 3587–3600, 2014.
[3] A. Blanco-Gonzalez, M. Manathunga, X. Yang, and M. Olivucci, ‘Comparative quantum-classical dynamics of natural and synthetic molecular rotors show how vibrational synchronization modulates the photoisomerization quantum efficiency’, Nat. Commun., vol. 15, no. 1, p. 3499, Apr. 2024, doi: 10.1038/s41467-024-47477-0.
[4] M. Gueye et al., ‘Engineering the vibrational coherence of vision into a synthetic molecular device’, Nat. Commun., vol. 9, no. 1, p. 313, 2018.
[5] M. Mgbukwu et al., ‘Tuning the Photoisomerization Mechanism of Oxindole Switches with Electron-Donating Substituents’, J. Phys. Chem. B, vol. 129, no. 15, pp. 3839–3850, 2025.
[6] M. Mgbukwu, C. Granados, A. Khodko, S. Haacke, O. Kornilov, and J. Léonard, ‘Ultrafast photoreaction dynamics of oxindole-based molecular switches’, in Advances in Ultrafast Condensed Phase Physics IV, SPIE, 2024, p. PC129920F.

Speaker

About (click to open/close)

Matthew Mgbukwu is a postdoctoral researcher in Dr. Alexander Gillett’s group in the Electronic and Photonic Materials division, Department of Physics, Chemistry and Biology (IFM), Linköping University, Sweden. He completed his PhD at the Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS, CNRS/Université de Strasbourg) under the supervision of Dr. Jérémie Léonard, combining femtosecond transient absorption, fluorescence up-conversion, and computational chemistry to unravel the photoisomerization mechanism of oxindole-based molecular photoswitches — biomimetic analogues of the retinal chromophore of rhodopsin. His work established how electrondonating substituents switch the excited-state pathway between precessional and axial motion around a conical intersection, reproducing with a single chemical handle the electrostatic control a photoreceptor protein exerts on its chromophore. He has also worked with the Helmholtz-Zentrum Dresden-Rossendorf (HZDR).

Matthew’s research applies ultrafast laser spectroscopy transient absorption, time-resolved infrared, and two-dimensional electronic spectroscopy to molecular photoswitches, molecular motors, and TADF emitters, asking how coherent vibrational motion controls photoreaction efficiency at conical intersections. The same question underlies both of his application interests: what biological photoreceptors reveal about designing efficient lightdriven systems for optogenetics and photopharmacology, and how molecular lightharvesting and solar energy conversion can serve Africa’s green energy transition. His expertise spans experimental nonlinear optical techniques and the development of custom scientific software (Python/PyQt5) for ultrafast instrument control. His postdoctoral position is supported by the Wallenberg Foundation (KAW) through the grant “Wavefunction control in organic semiconductors” (2024–2029).

Alongside his research, Matthew is active in building the collaborations and mentorship structures that sustain physics careers across Africa and its diaspora. He is the Diasporan Coordinator of the UniJos Global Physics Network (UGPN), which connects early-career researchers with mentors, research groups, and training opportunities abroad. He is also a board committee member of Photonics Nigeria, a society promoting photonics and optical sciences across Nigeria, raising the visibility of the field among students and institutions and strengthening its links to the international photonics community.


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The Biophysics in Africa Monthly Colloquium Series is a joint project of the African Light Source Foundation (AfLS), African Physical Society (AfPS), and the South African Institute of Physics (SAIP). SAIP is an adhering body of the International Union of Pure and Applied Biophysics (IUPAB). The colloquia are always on the last Wednesday of every month. In addition to participation by students and colleagues worldwide, we invite speakers from around the globe as well. For more information please feel free to contact us at colloquium.series@africanbiophysics.org